STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80066.1FAH family protein; KEGG: bcv:Bcav_1564 1.4e-35 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; Psort location: CytoplasmicMembrane, score: 9.55. (254 aa)    
Predicted Functional Partners:
KXB79264.1
FAD binding domain protein; KEGG: jde:Jden_2117 5.8e-275 D-lactate dehydrogenase K06911; Psort location: CytoplasmicMembrane, score: 8.78.
  
 
 0.834
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.805
KXB79522.1
KEGG: ahe:Arch_1331 1.6e-295 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239; Psort location: Cytoplasmic, score: 9.89.
  
 
  0.796
KXB79521.1
KEGG: mcu:HMPREF0573_10281 7.8e-106 sdhB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240; Psort location: Cytoplasmic, score: 9.89.
  
 
  0.781
KXB81756.1
KEGG: jde:Jden_1798 9.3e-197 iron-containing alcohol dehydrogenase; K04072 acetaldehyde dehydrogenase / alcohol dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.625
KXB81691.1
Putative phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.604
KXB79523.1
Succinate dehydrogenase cytochrome B subunit, b558 family; KEGG: mcu:HMPREF0573_10283 1.2e-61 sdhC; succinate dehydrogenase subunit C K00241; Psort location: CytoplasmicMembrane, score: 10.00.
    
  0.450
KXB81158.1
KEGG: ssm:Spirs_0789 3.5e-110 aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+); Psort location: Cytoplasmic, score: 9.97.
  
 
 0.405
KXB81181.1
KEGG: pak:HMPREF0675_3499 1.1e-202 mmsA; methylmalonate-semialdehyde dehydrogenase (acylating) K00140; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.405
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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