STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79934.1Integron integrase; KEGG: pfe:PSF113_1062 1.5e-16 xerD; XerD protein K04763; Psort location: Cytoplasmic, score: 9.97. (337 aa)    
Predicted Functional Partners:
KXB79932.1
Hypothetical protein.
       0.773
KXB82071.1
KEGG: rer:RER_14720 4.9e-102 pta; phosphate acetyltransferase K13788; Psort location: Cytoplasmic, score: 7.50.
    
 0.771
KXB79935.1
Dihydropteroate synthase; KEGG: cdb:CDBH8_2293 4.8e-145 sulI; dihydropteroate synthase K00796; Psort location: Cytoplasmic, score: 7.50.
 
     0.749
KXB79936.1
KEGG: ppo:PPM_0301 1.6e-09 yesJ; GNAT family acetyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
     0.651
apt
Putative adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.451
KXB80042.1
KEGG: bcv:Bcav_2151 1.1e-92 prephenate dehydrogenase; K04517 prephenate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.
  
    0.451
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.414
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.