STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79860.1VRR-NUC domain protein; KEGG: bbt:BBta_3691 0.0017 hypothetical protein; K02342 DNA polymerase III subunit epsilon. (93 aa)    
Predicted Functional Partners:
KXB79861.1
Protein, SNF2 family; KEGG: crd:CRES_1547 3.8e-168 DNA repair and recombination protein; Psort location: CytoplasmicMembrane, score: 8.16.
 
     0.953
KXB79859.1
Phage/plasmid primase, P4 family domain protein; KEGG: gva:HMPREF0424_0874 1.1e-28 nucleoside triphosphatase, D5 family.
 
     0.893
KXB79862.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.830
KXB79846.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.791
KXB79847.1
Hypothetical protein.
 
     0.791
KXB79848.1
KEGG: mcu:HMPREF0573_11260 2.2e-266 DNA-directed DNA polymerase K02334; Psort location: Cytoplasmic, score: 7.50.
 
     0.781
KXB79858.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.749
KXB79857.1
BRO family protein; Psort location: Cytoplasmic, score: 7.50.
       0.708
KXB79864.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.674
KXB79863.1
KEGG: efc:EFAU004_02384 0.0037 HNH endonuclease; Psort location: Cytoplasmic, score: 7.50.
       0.527
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.