STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79653.1Basic membrane protein. (369 aa)    
Predicted Functional Partners:
folD
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.754
KXB80978.1
KEGG: apn:Asphe3_10700 1.7e-151 monosaccharide ABC transporter ATP-binding protein, CUT2 family; K10441 ribose transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.
    
  0.703
KXB79652.1
KEGG: mcu:HMPREF0573_10170 1.3e-71 putative exodeoxyribonuclease III; K01142 exodeoxyribonuclease III; Psort location: Cytoplasmic, score: 9.97.
       0.701
KXB79651.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.693
KXB81800.1
Hypothetical protein.
  
     0.674
KXB79997.1
Hypothetical protein; KEGG: mph:MLP_20300 4.0e-15 rnhA; ribonuclease HI K03469.
 
     0.634
KXB80681.1
Hypothetical protein; KEGG: gvg:HMPREF0421_20853 1.1e-09 brp/Blh family beta-carotene 15,15'-monooxygenase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.598
KXB80532.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.590
KXB81017.1
LPXTG-motif protein cell wall anchor domain protein; KEGG: mmw:Mmwyl1_1672 9.8e-18 beta strand repeat-containing protein.
  
     0.570
KXB81673.1
Hypothetical protein; KEGG: plm:Plim_0588 0.00011 prolyl oligopeptidase K01322; Psort location: Cytoplasmic, score: 7.50.
  
     0.566
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.