STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79467.1Hypothetical protein; KEGG: sgr:SGR_5329 1.6e-08 dihydrolipoamide S-succinyltransferase; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase). (140 aa)    
Predicted Functional Partners:
KXB79468.1
Hypothetical protein; KEGG: rpx:Rpdx1_2302 5.6e-05 DNA topoisomerase I K03168.
      
0.693
KXB79488.1
Site-specific recombinase, phage integrase family; KEGG: pfe:PSF113_1062 3.1e-12 xerD; XerD protein K04763; Psort location: Cytoplasmic, score: 9.67.
       0.468
KXB79489.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.
       0.468
KXB79490.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.468
KXB79491.1
Putative sporulation initiation inhibitor protein Soj; KEGG: fal:FRAAL2247 5.4e-27 chromosome partitioning protein K03496.
       0.468
KXB79492.1
Hypothetical protein.
       0.468
KXB79416.1
LPXTG-motif protein cell wall anchor domain protein.
       0.409
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.