STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79444.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.35. (617 aa)    
Predicted Functional Partners:
KXB79445.1
ATP/GTP-binding family protein; KEGG: ase:ACPL_5938 9.2e-71 dnaB; Replicative DNA helicase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.965
KXB79446.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.907
KXB79447.1
Hypothetical protein; KEGG: xfn:XfasM23_1953 2.0e-17 cellulase; K01179 endoglucanase; Psort location: CytoplasmicMembrane, score: 9.93.
 
     0.895
KXB79863.1
KEGG: efc:EFAU004_02384 0.0037 HNH endonuclease; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.871
KXB79437.1
Relaxase/mobilization nuclease domain protein; KEGG: tin:Tint_2201 9.1e-05 DNA topoisomerase.
 
   
 0.813
KXB79443.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.773
KXB79442.1
Hypothetical protein.
       0.545
KXB79441.1
Glutaredoxin; KEGG: apn:Asphe3_21430 4.2e-11 ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit K06191.
       0.542
KXB79425.1
Fic family protein; KEGG: yey:Y11_23931 0.00015 type I restriction-modification system,specificity subunit S; Psort location: Cytoplasmic, score: 7.50.
 
     0.504
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.448
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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