STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79452.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87. (469 aa)    
Predicted Functional Partners:
KXB79453.1
Hypothetical protein.
      
0.773
KXB79454.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.773
KXB79455.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.773
KXB79456.1
Hypothetical protein.
       0.773
KXB79457.1
KEGG: rer:RER_49390 1.1e-12 signal peptidase I K13280; Psort location: CytoplasmicMembrane, score: 8.16.
       0.773
KXB79458.1
Tat pathway signal sequence domain protein.
       0.773
KXB79231.1
Hypothetical protein; KEGG: dme:Dmel_CG12781 4.9e-18 nahoda; CG12781 gene product from transcript CG12781-RA; Psort location: Cellwall, score: 9.20.
   
  0.524
KXB81551.1
LPXTG-motif protein cell wall anchor domain protein; KEGG: oih:OB2331 1.0e-60 bacillopeptidase F; K13276 bacillopeptidase F; Psort location: Extracellular, score: 9.72.
   
 0.490
KXB79217.1
Hypothetical protein; Psort location: Extracellular, score: 9.13.
       0.457
KXB79218.1
Hypothetical protein; KEGG: mar:MAE_12950 0.0070 cation-transporting P-type ATPase; K01537 Ca2+-transporting ATPase.
       0.457
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.