STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79313.1KEGG: ske:Sked_33670 1.6e-43 methionine-R-sulfoxide reductase K07305; Psort location: Cytoplasmic, score: 7.50. (133 aa)    
Predicted Functional Partners:
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
 0.995
KXB79314.1
KEGG: pfe:PSF113_0041 1.2e-06 Endonuclease/exonuclease/phosphatase family protein K06896; Psort location: CytoplasmicMembrane, score: 9.55.
       0.829
KXB79312.1
Transporter, small conductance mechanosensitive ion channel MscS family protein; KEGG: mla:Mlab_1701 0.00020 phosphoglycerate mutase K01834; Psort location: CytoplasmicMembrane, score: 9.55.
       0.827
KXB79315.1
Putative membrane protein; KEGG: pfe:PSF113_1815 5.8e-30 integral membrane protein K11939; Psort location: CytoplasmicMembrane, score: 10.00.
       0.798
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.772
rpmA
Ribosomal protein L27; KEGG: apb:SAR116_1855 1.1e-19 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL27 family.
    
   0.742
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.742
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.742
KXB80786.1
Ribosomal protein L28; KEGG: apb:SAR116_1905 0.0018 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.67.
    
   0.742
rpsP
Ribosomal protein S16; KEGG: apb:SAR116_1817 2.0e-20 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.95; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.742
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.