STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79318.1Cation diffusion facilitator family transporter; KEGG: eci:UTI89_C0749 3.9e-40 zinc transporter ZitB K03295; Psort location: CytoplasmicMembrane, score: 10.00. (333 aa)    
Predicted Functional Partners:
purC-2
KEGG: xce:Xcel_3133 4.8e-74 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923; Psort location: Cytoplasmic, score: 7.50; Belongs to the SAICAR synthetase family.
       0.567
KXB80985.1
Copper-exporting ATPase; KEGG: msp:Mspyr1_52570 8.1e-230 copper/silver-translocating P-type ATPase; K01533 Cu2+-exporting ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.523
KXB80342.1
e1-E2 ATPase; KEGG: ske:Sked_16240 2.3e-170 P-type ATPase, translocating; K01552; Psort location: CytoplasmicMembrane, score: 10.00.
    
 0.468
KXB80548.1
mercury(II) reductase; KEGG: sag:SAG1254 2.1e-279 merA-1; mercuric reductase; K00520 mercuric reductase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.449
KXB81801.1
Hypothetical protein; KEGG: azl:AZL_005310 5.2e-06 ribonuclease E; K08300 ribonuclease E; Psort location: CytoplasmicMembrane, score: 9.55.
   
    0.433
KXB79447.1
Hypothetical protein; KEGG: xfn:XfasM23_1953 2.0e-17 cellulase; K01179 endoglucanase; Psort location: CytoplasmicMembrane, score: 9.93.
   
    0.433
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.