STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79372.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (222 aa)    
Predicted Functional Partners:
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
  
 0.881
KXB79374.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
     
 0.831
KXB79371.1
Methyltransferase domain protein; KEGG: aai:AARI_10310 8.1e-40 SAM-dependent methyltransferase.
       0.773
KXB81863.1
Hypothetical protein; KEGG: sen:SACE_1077 1.2e-59 ATP-dependent DNA helicase K01529; Psort location: Cytoplasmic, score: 7.50.
  
     0.716
KXB81706.1
POTRA domain protein, FtsQ-type; Psort location: CytoplasmicMembrane, score: 8.16.
  
     0.706
KXB81000.1
Hypothetical protein; KEGG: dbr:Deba_0747 0.0037 membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease.
  
     0.706
KXB81501.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 8.16.
  
     0.705
KXB81003.1
Hypothetical protein.
  
     0.685
KXB80537.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.650
KXB81109.1
Hypothetical protein; KEGG: mlu:Mlut_05000 1.9e-47 exopolyphosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase.
  
     0.645
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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