STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEN43098.1Outer membrane protein (fragment). (272 aa)    
Predicted Functional Partners:
CEN43100.1
Chaperone protein skp.
 
     0.857
CEN43096.1
Outer membrane protein, OMP85 family.
 
  
 0.815
CEN43092.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
   
   0.783
ispU
Undecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
     0.670
CEN46266.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.645
CEN49790.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.599
CEN45438.1
OmpA family protein.
 
 
 0.571
CEN43875.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.558
CEN44828.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.553
CEN46876.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.544
Your Current Organism:
Capnocytophaga canis
NCBI taxonomy Id: 1848903
Other names: C. canis, Capnocytophaga canis Renzi et al. 2016, Capnocytophaga sp. HP20001, Capnocytophaga sp. HP33001, Capnocytophaga sp. HP40001, DSM 101831, LMG 29146, LMG:29146, strain CcD38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.