STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP6252_05556Uncharacterized protein. (920 aa)    
Predicted Functional Partners:
BP6252_05537
Uncharacterized protein.
   
 0.824
BP6252_07302
Uncharacterized protein.
    
 0.797
BP6252_00080
Uncharacterized protein.
    
 0.797
BP6252_13066
Uncharacterized protein.
    
 0.597
BP6252_03776
Outer arm dynein light chain 1.
   
  0.560
BP6252_13730
ANK_REP_REGION domain-containing protein.
   
  0.542
BP6252_06719
ANK_REP_REGION domain-containing protein.
   
  0.542
BP6252_08437
Uncharacterized protein.
    
  0.518
BP6252_05380
Uncharacterized protein.
  
 
  0.512
BP6252_04430
Uncharacterized protein.
  
 
  0.480
Your Current Organism:
Coleophoma cylindrospora
NCBI taxonomy Id: 1849047
Other names: C. cylindrospora, Coleophoma sp. CBS 449.70, Macrophoma cylindrospora, Phoma cylindrospora, Sphaeropsis cylindrospora
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.