OAO04918.1 protein (Sphingomonadales bacterium EhC05)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

OAO04918.1

TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (959 aa)

Predicted Functional Partners:

OAO04860.1

0.710

OAO04090.1

0.668

OAO04878.1

0.644

OAO04011.1

0.632

OAO04304.1

0.618

OAO02244.1

0.610

OAO02034.1

0.599

OAO01669.1

0.574

OAO04352.1

0.567

OAO01135.1

0.564

Your Current Organism:

Sphingomonadales bacterium EhC05

NCBI taxonomy Id: 1849171
Other names: S. bacterium EhC05

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OAO01135.1	OAO01669.1	A8B75_16690	A8B75_14640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
OAO01135.1	OAO02244.1	A8B75_16690	A8B75_12415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.751
OAO01135.1	OAO04090.1	A8B75_16690	A8B75_08485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.721
OAO01135.1	OAO04860.1	A8B75_16690	A8B75_06885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
OAO01135.1	OAO04918.1	A8B75_16690	A8B75_06995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
OAO01669.1	OAO01135.1	A8B75_14640	A8B75_16690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
OAO01669.1	OAO02034.1	A8B75_14640	A8B75_12825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
OAO01669.1	OAO04090.1	A8B75_14640	A8B75_08485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.754
OAO01669.1	OAO04304.1	A8B75_14640	A8B75_08065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
OAO01669.1	OAO04860.1	A8B75_14640	A8B75_06885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
OAO01669.1	OAO04918.1	A8B75_14640	A8B75_06995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
OAO02034.1	OAO01669.1	A8B75_12825	A8B75_14640	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
OAO02034.1	OAO02244.1	A8B75_12825	A8B75_12415	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.554
OAO02034.1	OAO04090.1	A8B75_12825	A8B75_08485	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.470
OAO02034.1	OAO04918.1	A8B75_12825	A8B75_06995	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
OAO02244.1	OAO01135.1	A8B75_12415	A8B75_16690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
OAO02244.1	OAO02034.1	A8B75_12415	A8B75_12825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
OAO02244.1	OAO04090.1	A8B75_12415	A8B75_08485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.757
OAO02244.1	OAO04304.1	A8B75_12415	A8B75_08065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
OAO02244.1	OAO04860.1	A8B75_12415	A8B75_06885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506

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Network Stats

number of nodes:

11

number of edges:

39

average node degree:

7.09

avg. local clustering coefficient:

0.95

expected number of edges:

33

PPI enrichment p-value:

0.159

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006631

Fatty acid metabolic process

4 of 32

1.27

0.7

0.0247

GO:0044281

Small molecule metabolic process

10 of 316

0.67

0.55

0.00064

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1503

Mixed, incl. EAL domain, and tRNA synthetases class II (A)

5 of 13

1.76

2.12

1.41e-05

CL:1504

Mixed, incl. EAL domain, and Naphthalene degradation

3 of 7

1.81

1.29

0.0024

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00071

Fatty acid degradation

4 of 9

1.82

1.91

7.55e-05

map00626

Naphthalene degradation

3 of 7

1.81

1.4

0.0013

map00350

Tyrosine metabolism

3 of 10

1.65

1.25

0.0021

map01220

Degradation of aromatic compounds

3 of 13

1.54

1.14

0.0030

map00625

Chloroalkane and chloroalkene degradation

3 of 13

1.54

1.14

0.0030

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005835

Fatty acid synthase complex

2 of 2

2.17

0.74

0.0437

GOCC:0005737

Cytoplasm

9 of 474

0.45

0.29

0.0437

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0012

Acyltransferase

3 of 18

1.4

0.64

0.0444

KW-0808

Transferase

7 of 238

0.64

0.38

0.0444

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