STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAO01050.1Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)    
Predicted Functional Partners:
OAO01048.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
OAO01049.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
OAO01121.1
Molecular chaperone DnaK; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.671
OAO03030.1
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.667
OAO05202.1
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.667
OAO01047.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.529
OAO01051.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.481
OAO01122.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.472
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.444
OAO01120.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.403
Your Current Organism:
Sphingomonadales bacterium EhC05
NCBI taxonomy Id: 1849171
Other names: S. bacterium EhC05
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.