STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001660705_00290Unannotated protein. (864 aa)    
Predicted Functional Partners:
GCA_001660705_00289
Unannotated protein.
       0.757
GCA_001660705_00288
Unannotated protein.
    
  0.657
GCA_001660705_00758
Unannotated protein.
    
  0.576
GCA_001660705_04237
Unannotated protein.
    
  0.576
GCA_001660705_04239
Unannotated protein.
    
  0.576
GCA_001660705_04221
Unannotated protein.
    
  0.566
GCA_001660705_01175
Unannotated protein.
   
 
  0.528
GCA_001660705_01708
Unannotated protein.
   
 
  0.528
GCA_001660705_02136
Unannotated protein.
   
 
  0.528
GCA_001660705_02140
Unannotated protein.
   
 
  0.528
Your Current Organism:
Labilibacter aurantiacus
NCBI taxonomy Id: 1849719
Other names: Cytophaga sp. HQYD1, KCTC 42583, L. aurantiacus, Labilibacter aurantiacus Lu et al. 2017, Labilibacter sp. HQYD1, MCCC 1K02304, strain HQYD1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.