STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001660705_00578Unannotated protein. (635 aa)    
Predicted Functional Partners:
GCA_001660705_00335
Unannotated protein.
 
 
 0.860
GCA_001660705_01414
Unannotated protein.
   
 0.858
GCA_001660705_04569
Unannotated protein.
    
 0.844
GCA_001660705_03591
Unannotated protein.
 
 0.843
GCA_001660705_00279
Unannotated protein.
  
 0.839
GCA_001660705_03318
Unannotated protein.
    
  0.804
GCA_001660705_01133
Unannotated protein.
   
 0.794
GCA_001660705_01164
Unannotated protein.
    
  0.785
GCA_001660705_02271
Unannotated protein.
    
  0.785
GCA_001660705_00579
Unannotated protein.
       0.768
Your Current Organism:
Labilibacter aurantiacus
NCBI taxonomy Id: 1849719
Other names: Cytophaga sp. HQYD1, KCTC 42583, L. aurantiacus, Labilibacter aurantiacus Lu et al. 2017, Labilibacter sp. HQYD1, MCCC 1K02304, strain HQYD1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.