STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001660705_00955Unannotated protein. (590 aa)    
Predicted Functional Partners:
GCA_001660705_00954
Unannotated protein.
    0.947
GCA_001660705_00952
Unannotated protein.
 
    0.787
GCA_001660705_02192
Unannotated protein.
  
  0.735
GCA_001660705_01422
Unannotated protein.
  
  0.716
GCA_001660705_00953
Unannotated protein.
       0.683
GCA_001660705_00951
Unannotated protein.
       0.682
GCA_001660705_02190
Unannotated protein.
 
    0.675
GCA_001660705_04458
Unannotated protein.
  
 0.643
GCA_001660705_00949
Unannotated protein.
 
     0.632
GCA_001660705_00950
Unannotated protein.
 
     0.598
Your Current Organism:
Labilibacter aurantiacus
NCBI taxonomy Id: 1849719
Other names: Cytophaga sp. HQYD1, KCTC 42583, L. aurantiacus, Labilibacter aurantiacus Lu et al. 2017, Labilibacter sp. HQYD1, MCCC 1K02304, strain HQYD1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.