STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001660705_01157Unannotated protein. (422 aa)    
Predicted Functional Partners:
GCA_001660705_01156
Unannotated protein.
    0.913
GCA_001660705_03606
Unannotated protein.
    0.811
GCA_001660705_02235
Unannotated protein.
  
 0.608
GCA_001660705_01158
Unannotated protein.
  
    0.570
GCA_001660705_03952
Unannotated protein.
    
   0.556
GCA_001660705_04151
Unannotated protein.
  
  0.540
GCA_001660705_01235
Unannotated protein.
  
  
  0.510
GCA_001660705_02267
Unannotated protein.
    0.499
GCA_001660705_04149
Unannotated protein.
   
  0.487
GCA_001660705_04593
Unannotated protein.
   
  0.476
Your Current Organism:
Labilibacter aurantiacus
NCBI taxonomy Id: 1849719
Other names: Cytophaga sp. HQYD1, KCTC 42583, L. aurantiacus, Labilibacter aurantiacus Lu et al. 2017, Labilibacter sp. HQYD1, MCCC 1K02304, strain HQYD1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.