STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001660705_01543Unannotated protein. (364 aa)    
Predicted Functional Partners:
GCA_001660705_03498
Unannotated protein.
   
 0.976
GCA_001660705_00279
Unannotated protein.
   
 0.800
GCA_001660705_01751
Unannotated protein.
   
 0.785
GCA_001660705_00259
Unannotated protein.
    
  0.748
GCA_001660705_01006
Unannotated protein.
    
  0.748
GCA_001660705_03383
Unannotated protein.
    
  0.748
GCA_001660705_04486
Unannotated protein.
    
  0.748
GCA_001660705_01414
Unannotated protein.
   
 0.742
GCA_001660705_02158
Unannotated protein.
   
   0.724
GCA_001660705_03811
Unannotated protein.
   
 0.698
Your Current Organism:
Labilibacter aurantiacus
NCBI taxonomy Id: 1849719
Other names: Cytophaga sp. HQYD1, KCTC 42583, L. aurantiacus, Labilibacter aurantiacus Lu et al. 2017, Labilibacter sp. HQYD1, MCCC 1K02304, strain HQYD1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.