STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001660705_03238Unannotated protein. (589 aa)    
Predicted Functional Partners:
GCA_001660705_01949
Unannotated protein.
  
 
 0.931
GCA_001660705_02158
Unannotated protein.
  
 0.821
GCA_001660705_00326
Unannotated protein.
    
  0.812
GCA_001660705_04513
Unannotated protein.
  
 
 0.801
GCA_001660705_00547
Unannotated protein.
    
  0.760
GCA_001660705_01703
Unannotated protein.
    
  0.759
GCA_001660705_04471
Unannotated protein.
  
 
 0.739
GCA_001660705_03509
Unannotated protein.
  
 0.707
GCA_001660705_04470
Unannotated protein.
  
 0.707
GCA_001660705_02416
Unannotated protein.
  
  
  0.697
Your Current Organism:
Labilibacter aurantiacus
NCBI taxonomy Id: 1849719
Other names: Cytophaga sp. HQYD1, KCTC 42583, L. aurantiacus, Labilibacter aurantiacus Lu et al. 2017, Labilibacter sp. HQYD1, MCCC 1K02304, strain HQYD1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.