STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001660705_03384Unannotated protein. (294 aa)    
Predicted Functional Partners:
GCA_001660705_03383
Unannotated protein.
       0.727
GCA_001660705_01821
Unannotated protein.
  
  0.651
GCA_001660705_00707
Unannotated protein.
 
  
  0.544
GCA_001660705_03385
Unannotated protein.
       0.506
GCA_001660705_04601
Unannotated protein.
 
     0.505
GCA_001660705_00162
Unannotated protein.
 
  
  0.488
GCA_001660705_04594
Unannotated protein.
 
  
  0.471
GCA_001660705_00592
Unannotated protein.
 
     0.425
GCA_001660705_04593
Unannotated protein.
  
     0.425
GCA_001660705_01822
Unannotated protein.
 
  
  0.424
Your Current Organism:
Labilibacter aurantiacus
NCBI taxonomy Id: 1849719
Other names: Cytophaga sp. HQYD1, KCTC 42583, L. aurantiacus, Labilibacter aurantiacus Lu et al. 2017, Labilibacter sp. HQYD1, MCCC 1K02304, strain HQYD1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.