STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001660705_04076Unannotated protein. (290 aa)    
Predicted Functional Partners:
GCA_001660705_04121
Unannotated protein.
 0.982
GCA_001660705_00200
Unannotated protein.
  
  0.827
GCA_001660705_00603
Unannotated protein.
  
  0.818
GCA_001660705_00198
Unannotated protein.
  
  0.816
GCA_001660705_04394
Unannotated protein.
  
 0.800
GCA_001660705_03377
Unannotated protein.
  
  0.794
GCA_001660705_00196
Unannotated protein.
 
  0.792
GCA_001660705_03277
Unannotated protein.
 
  0.785
GCA_001660705_00602
Unannotated protein.
  
  0.774
GCA_001660705_00197
Unannotated protein.
  
  0.761
Your Current Organism:
Labilibacter aurantiacus
NCBI taxonomy Id: 1849719
Other names: Cytophaga sp. HQYD1, KCTC 42583, L. aurantiacus, Labilibacter aurantiacus Lu et al. 2017, Labilibacter sp. HQYD1, MCCC 1K02304, strain HQYD1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.