STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCZ76808.1EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant). (595 aa)    
Predicted Functional Partners:
SCZ77055.1
Diguanylate cyclase, GGDEF domain.
 
 
 0.876
SCZ79769.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.871
SCZ78961.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.852
SCZ78512.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.832
SCZ79071.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.810
SCZ76506.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.807
SCZ76540.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.807
SCZ78505.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.807
SCZ79517.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.807
SCZ76899.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.806
Your Current Organism:
Pseudobutyrivibrio xylanivorans
NCBI taxonomy Id: 185007
Other names: ATCC BAA-455, DSM 14809, P. xylanivorans, Pseudobutyrivibrio xylanivorans Kopecny et al. 2003, Pseudobutyrivibrio xylanovorans, strain Mz 5
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