STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCZ77921.1EDD domain protein, DegV family. (295 aa)    
Predicted Functional Partners:
SCZ81438.1
Hypothetical protein.
   0.950
SCZ81439.1
Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family.
 
    0.718
SCZ77923.1
Uncharacterized membrane protein HdeD, DUF308 family.
  
    0.705
SCZ77926.1
Hypothetical protein.
       0.704
SCZ77927.1
Transcriptional regulator, TetR family.
       0.695
SCZ76697.1
Dihydroxyacetone kinase family protein.
 
   0.640
SCZ77919.1
Heptaprenyl diphosphate synthase.
       0.597
SCZ77912.1
Nitroreductase.
 
     0.592
SCZ77917.1
Hypothetical protein.
       0.591
SCZ77915.1
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
       0.577
Your Current Organism:
Pseudobutyrivibrio xylanivorans
NCBI taxonomy Id: 185007
Other names: ATCC BAA-455, DSM 14809, P. xylanivorans, Pseudobutyrivibrio xylanivorans Kopecny et al. 2003, Pseudobutyrivibrio xylanovorans, strain Mz 5
Server load: low (16%) [HD]