STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCZ78536.1Putative ABC transport system permease protein. (417 aa)    
Predicted Functional Partners:
SCZ78538.1
Putative ABC transport system ATP-binding protein.
 
 0.995
SCZ78539.1
HlyD family secretion protein.
 
 
 0.980
SCZ80330.1
Putative ABC transport system ATP-binding protein.
 
 0.977
SCZ77763.1
Putative ABC transport system ATP-binding protein.
 
 0.975
SCZ78537.1
Biotin-lipoyl like.
 
 
 0.947
SCZ80416.1
Putative ABC transport system ATP-binding protein.
 
 0.896
SCZ80331.1
Multidrug efflux pump subunit AcrA (membrane-fusion protein).
 
  
 0.891
SCZ77761.1
Multidrug resistance efflux pump.
 
 
 0.868
SCZ78039.1
Putative ABC transport system ATP-binding protein.
 
 0.857
SCZ79864.1
Putative ABC transport system ATP-binding protein.
 
 0.830
Your Current Organism:
Pseudobutyrivibrio xylanivorans
NCBI taxonomy Id: 185007
Other names: ATCC BAA-455, DSM 14809, P. xylanivorans, Pseudobutyrivibrio xylanivorans Kopecny et al. 2003, Pseudobutyrivibrio xylanovorans, strain Mz 5
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