Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GltA | SCZ79328.1 | SAMN02910350_01738 | SAMN02910350_01739 | Glutamate synthase (NADPH/NADH) small chain. | ferredoxin--NADP+ reductase. | 0.998 |
GltA | carB | SAMN02910350_01738 | SAMN02910350_00880 | Glutamate synthase (NADPH/NADH) small chain. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.912 |
GltA | pyrD | SAMN02910350_01738 | SAMN02910350_01836 | Glutamate synthase (NADPH/NADH) small chain. | Dihydroorotate dehydrogenase (NAD+) catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate. | 0.946 |
GltA | pyrK | SAMN02910350_01738 | SAMN02910350_01835 | Glutamate synthase (NADPH/NADH) small chain. | Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). | 0.715 |
SCZ77839.1 | SCZ79328.1 | SAMN02910350_00956 | SAMN02910350_01739 | Orotate phosphoribosyltransferase. | ferredoxin--NADP+ reductase. | 0.643 |
SCZ77839.1 | carA | SAMN02910350_00956 | SAMN02910350_00881 | Orotate phosphoribosyltransferase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.744 |
SCZ77839.1 | carB | SAMN02910350_00956 | SAMN02910350_00880 | Orotate phosphoribosyltransferase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.768 |
SCZ77839.1 | pyrB | SAMN02910350_00956 | SAMN02910350_00392 | Orotate phosphoribosyltransferase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.744 |
SCZ77839.1 | pyrC | SAMN02910350_00956 | SAMN02910350_01833 | Orotate phosphoribosyltransferase. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.744 |
SCZ77839.1 | pyrD | SAMN02910350_00956 | SAMN02910350_01836 | Orotate phosphoribosyltransferase. | Dihydroorotate dehydrogenase (NAD+) catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate. | 0.874 |
SCZ77839.1 | pyrF | SAMN02910350_00956 | SAMN02910350_01834 | Orotate phosphoribosyltransferase. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.866 |
SCZ77839.1 | pyrK | SAMN02910350_00956 | SAMN02910350_01835 | Orotate phosphoribosyltransferase. | Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). | 0.814 |
SCZ79328.1 | GltA | SAMN02910350_01739 | SAMN02910350_01738 | ferredoxin--NADP+ reductase. | Glutamate synthase (NADPH/NADH) small chain. | 0.998 |
SCZ79328.1 | SCZ77839.1 | SAMN02910350_01739 | SAMN02910350_00956 | ferredoxin--NADP+ reductase. | Orotate phosphoribosyltransferase. | 0.643 |
SCZ79328.1 | carA | SAMN02910350_01739 | SAMN02910350_00881 | ferredoxin--NADP+ reductase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.741 |
SCZ79328.1 | carB | SAMN02910350_01739 | SAMN02910350_00880 | ferredoxin--NADP+ reductase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.752 |
SCZ79328.1 | pyrB | SAMN02910350_01739 | SAMN02910350_00392 | ferredoxin--NADP+ reductase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.742 |
SCZ79328.1 | pyrC | SAMN02910350_01739 | SAMN02910350_01833 | ferredoxin--NADP+ reductase. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.753 |
SCZ79328.1 | pyrD | SAMN02910350_01739 | SAMN02910350_01836 | ferredoxin--NADP+ reductase. | Dihydroorotate dehydrogenase (NAD+) catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate. | 0.972 |
SCZ79328.1 | pyrE | SAMN02910350_01739 | SAMN02910350_02264 | ferredoxin--NADP+ reductase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.643 |
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