STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCZ81094.1Major Facilitator Superfamily protein. (368 aa)    
Predicted Functional Partners:
SCZ81102.1
N-Dimethylarginine dimethylaminohydrolase.
 
    0.556
SCZ80657.1
Site-specific recombinase XerD.
  
    0.490
SCZ81092.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.463
SCZ81104.1
Arginine utilization protein RocB.
 
     0.461
SCZ81096.1
Hypothetical protein.
  
    0.425
hisC-2
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
    0.425
SCZ81090.1
Signal transduction histidine kinase.
  
  
 0.419
SCZ81098.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.410
SCZ80666.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.402
Your Current Organism:
Pseudobutyrivibrio xylanivorans
NCBI taxonomy Id: 185007
Other names: ATCC BAA-455, DSM 14809, P. xylanivorans, Pseudobutyrivibrio xylanivorans Kopecny et al. 2003, Pseudobutyrivibrio xylanovorans, strain Mz 5
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