Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NifJ | rnz | SAMN02910350_00527 | SAMN02910350_02863 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | 0.479 |
SCZ81527.1 | SCZ81529.1 | SAMN02910350_02857 | SAMN02910350_02858 | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | Uncharacterized protein. | 0.774 |
SCZ81527.1 | SCZ81531.1 | SAMN02910350_02857 | SAMN02910350_02859 | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | YcxB-like protein. | 0.417 |
SCZ81527.1 | SCZ81535.1 | SAMN02910350_02857 | SAMN02910350_02861 | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaB. | 0.438 |
SCZ81527.1 | SCZ81537.1 | SAMN02910350_02857 | SAMN02910350_02862 | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | Ribosomal-protein-alanine N-acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. | 0.434 |
SCZ81527.1 | SCZ81541.1 | SAMN02910350_02857 | SAMN02910350_02864 | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | Hypothetical protein. | 0.417 |
SCZ81527.1 | TsaE | SAMN02910350_02857 | SAMN02910350_02860 | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE. | 0.417 |
SCZ81527.1 | ispD | SAMN02910350_02857 | SAMN02910350_02866 | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). | 0.437 |
SCZ81527.1 | rnz | SAMN02910350_02857 | SAMN02910350_02863 | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | 0.468 |
SCZ81527.1 | tsaD | SAMN02910350_02857 | SAMN02910350_02865 | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | N6-L-threonylcarbamoyladenine synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.417 |
SCZ81529.1 | SCZ81527.1 | SAMN02910350_02858 | SAMN02910350_02857 | Uncharacterized protein. | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | 0.774 |
SCZ81529.1 | SCZ81531.1 | SAMN02910350_02858 | SAMN02910350_02859 | Uncharacterized protein. | YcxB-like protein. | 0.422 |
SCZ81529.1 | SCZ81535.1 | SAMN02910350_02858 | SAMN02910350_02861 | Uncharacterized protein. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaB. | 0.625 |
SCZ81529.1 | SCZ81537.1 | SAMN02910350_02858 | SAMN02910350_02862 | Uncharacterized protein. | Ribosomal-protein-alanine N-acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. | 0.610 |
SCZ81529.1 | SCZ81541.1 | SAMN02910350_02858 | SAMN02910350_02864 | Uncharacterized protein. | Hypothetical protein. | 0.496 |
SCZ81529.1 | TsaE | SAMN02910350_02858 | SAMN02910350_02860 | Uncharacterized protein. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE. | 0.611 |
SCZ81529.1 | ispD | SAMN02910350_02858 | SAMN02910350_02866 | Uncharacterized protein. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). | 0.443 |
SCZ81529.1 | rnz | SAMN02910350_02858 | SAMN02910350_02863 | Uncharacterized protein. | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | 0.598 |
SCZ81529.1 | tsaD | SAMN02910350_02858 | SAMN02910350_02865 | Uncharacterized protein. | N6-L-threonylcarbamoyladenine synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.598 |
SCZ81531.1 | SCZ81527.1 | SAMN02910350_02859 | SAMN02910350_02857 | YcxB-like protein. | Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. | 0.417 |
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