STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbB_1Biopolymer transport protein ExbB. (218 aa)    
Predicted Functional Partners:
AQQ70194.1
Protein TolR.
  
 
 0.918
AQQ70561.1
Biopolymer transport protein ExbD.
 
 
 0.805
exbB_2
Biopolymer transport protein ExbB.
  
     0.770
AQQ70560.1
Transport protein TonB.
 
 
 0.699
lptB
Lipopolysaccharide export system ATP-binding protein LptB.
 
   
 0.699
pilQ_2
Type IV pilus biogenesis and competence protein PilQ precursor; Belongs to the bacterial secretin family.
  
     0.688
bamA
Outer membrane protein Omp85.
  
     0.684
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
     0.676
pilQ_1
Type IV pilus biogenesis and competence protein PilQ precursor; Belongs to the bacterial secretin family.
  
    0.662
AQQ70571.1
Protein TolR.
  
 
 0.645
Your Current Organism:
Limihaloglobus sulfuriphilus
NCBI taxonomy Id: 1851148
Other names: DSM 100118, JCM 31927, KCTC 15601, L. sulfuriphilus, Limihaloglobus sulfuriphilus Pradel et al., Phycisphaerae bacterium SM-Chi-D1, strain SM-Chi-D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.