STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msbALipid A export ATP-binding/permease protein MsbA. (712 aa)    
Predicted Functional Partners:
ecfA1
Energy-coupling factor transporter ATP-binding protein EcfA1.
   
0.878
yjjG_1
Pyrimidine 5'-nucleotidase YjjG.
       0.774
dnaK_1
Heat shock protein 70.
  
 0.759
dnaK_2
Heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.715
yxlF
Putative ABC transporter ATP-binding protein YxlF.
 
 0.664
ftsH_2
ATP-dependent zinc metalloprotease FtsH.
   
 0.552
ecsA
ABC-type transporter ATP-binding protein EcsA.
 
0.548
drrA
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
0.503
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
  
 0.502
aas
Bifunctional protein aas.
  
 
 0.494
Your Current Organism:
Limihaloglobus sulfuriphilus
NCBI taxonomy Id: 1851148
Other names: DSM 100118, JCM 31927, KCTC 15601, L. sulfuriphilus, Limihaloglobus sulfuriphilus Pradel et al., Phycisphaerae bacterium SM-Chi-D1, strain SM-Chi-D1
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