STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQQ71387.1Type II secretion system protein H. (167 aa)    
Predicted Functional Partners:
AQQ71384.1
comEA protein.
       0.632
AQQ71386.1
Type II secretion system protein I.
  
  
 0.614
AQQ71385.1
Hypothetical protein; Prepilin-type N-terminal cleavage/methylation domain.
  
  
 0.610
AQQ71381.1
Hypothetical protein.
       0.605
AQQ71382.1
Hypothetical protein.
       0.605
AQQ71383.1
Hypothetical protein.
       0.605
xcpT_11
PilD-dependent protein PddA.
  
  
 0.597
gspD_1
Putative general secretion pathway protein D.
       0.581
epsF_2
General secretion pathway protein F.
  
  
 0.553
xpsE_3
Type II traffic warden ATPase.
     
 0.530
Your Current Organism:
Limihaloglobus sulfuriphilus
NCBI taxonomy Id: 1851148
Other names: DSM 100118, JCM 31927, KCTC 15601, L. sulfuriphilus, Limihaloglobus sulfuriphilus Pradel et al., Phycisphaerae bacterium SM-Chi-D1, strain SM-Chi-D1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.