STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhRInner membrane transport permease YbhR. (245 aa)    
Predicted Functional Partners:
drrA
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
  
 0.939
AQQ71935.1
CAAX prenyl protease-related protein.
  
  
 0.611
AQQ69673.1
Malonic semialdehyde reductase.
  
  
 0.567
AQQ69702.1
Intracellular protease, PfpI family.
  
  
 0.567
AQQ72343.1
Nitroreductase A.
  
  
 0.567
yodC
Putative NAD(P)H nitroreductase YodC.
  
  
 0.567
AQQ71953.1
Hypothetical protein; Transcriptional repressor SmtB homolog.
 
     0.517
AQQ71950.1
Hypothetical protein.
       0.511
ecsA
ABC-type transporter ATP-binding protein EcsA.
 
  
 0.427
ybhF
Putative ABC transporter ATP-binding protein YbhF.
 
  
 0.427
Your Current Organism:
Limihaloglobus sulfuriphilus
NCBI taxonomy Id: 1851148
Other names: DSM 100118, JCM 31927, KCTC 15601, L. sulfuriphilus, Limihaloglobus sulfuriphilus Pradel et al., Phycisphaerae bacterium SM-Chi-D1, strain SM-Chi-D1
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