STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdtCMultidrug transporter MdtC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1043 aa)    
Predicted Functional Partners:
AQQ72211.1
Multidrug efflux system subunit MdtA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.980
cusB
Cation efflux system protein CusB precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.957
czcB
Cation efflux system protein CzcB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.923
mdtA_1
Multidrug transporter MdtA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.911
mdtA_2
Multidrug transporter MdtA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.896
AQQ71208.1
Putative efflux pump membrane fusion protein.
  
 
 0.872
AQQ72213.1
Efflux transporter, RND family, MFP subunit.
  
 
 0.872
bepC
Outer membrane efflux protein BepC precursor.
 
 0.844
tolC
Outer membrane protein TolC precursor.
 
 0.583
AQQ72152.1
Preprotein translocase subunit YajC.
    
 
 0.567
Your Current Organism:
Limihaloglobus sulfuriphilus
NCBI taxonomy Id: 1851148
Other names: DSM 100118, JCM 31927, KCTC 15601, L. sulfuriphilus, Limihaloglobus sulfuriphilus Pradel et al., Phycisphaerae bacterium SM-Chi-D1, strain SM-Chi-D1
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