STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xcpT_21PilD-dependent protein PddA. (148 aa)    
Predicted Functional Partners:
xcpT_11
PilD-dependent protein PddA.
  
  
 
0.920
gspD_2
Putative general secretion pathway protein D.
 
    0.850
gspD_1
Putative general secretion pathway protein D.
  
    0.773
epsE_2
Type II traffic warden ATPase.
 
   0.738
epsF_4
General secretion pathway protein F.
 
    0.718
AQQ72257.1
Hypothetical protein.
  
 
 0.631
AQQ72255.1
Hypothetical protein.
       0.605
pulG
Pullulanase secretion protein PulG.
  
     0.567
xpsD
General secretion pathway protein D; Belongs to the bacterial secretin family.
  
    0.566
gspE_2
Type II traffic warden ATPase.
  
   0.493
Your Current Organism:
Limihaloglobus sulfuriphilus
NCBI taxonomy Id: 1851148
Other names: DSM 100118, JCM 31927, KCTC 15601, L. sulfuriphilus, Limihaloglobus sulfuriphilus Pradel et al., Phycisphaerae bacterium SM-Chi-D1, strain SM-Chi-D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.