GCA_900119705_01276 protein (Murdochiella vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GCA_900119705_01276

Unannotated protein. (137 aa)

Predicted Functional Partners:

GCA_900119705_00741

0.999

GCA_900119705_00743

0.999

GCA_900119705_00746

0.999

GCA_900119705_00748

0.999

GCA_900119705_00749

0.999

GCA_900119705_00751

0.999

GCA_900119705_00755

0.999

GCA_900119705_00756

0.999

GCA_900119705_00759

0.999

GCA_900119705_00765

0.999

Your Current Organism:

Murdochiella vaginalis

NCBI taxonomy Id: 1852373
Other names: CSUR P2341, DSM 102237, M. vaginalis, Murdochiella sp. Marseille-P2341, strain Marseille-P2341

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_900119705_00741	GCA_900119705_00743	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00741	GCA_900119705_00746	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00741	GCA_900119705_00748	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00741	GCA_900119705_00749	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00741	GCA_900119705_00751	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00741	GCA_900119705_00755	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00741	GCA_900119705_00756	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00741	GCA_900119705_00759	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00741	GCA_900119705_00765	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00741	GCA_900119705_01276	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00743	GCA_900119705_00741	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00743	GCA_900119705_00746	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00743	GCA_900119705_00748	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00743	GCA_900119705_00749	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00743	GCA_900119705_00751	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00743	GCA_900119705_00755	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00743	GCA_900119705_00756	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00743	GCA_900119705_00759	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00743	GCA_900119705_00765	Unannotated protein.	Unannotated protein.	0.999
GCA_900119705_00743	GCA_900119705_01276	Unannotated protein.	Unannotated protein.	0.999