STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001676655_00546Unannotated protein. (457 aa)    
Predicted Functional Partners:
GCA_001676655_00545
Unannotated protein.
       0.773
GCA_001676655_00544
Unannotated protein.
       0.545
GCA_001676655_01041
Unannotated protein.
     
 0.460
GCA_001676655_01086
Unannotated protein.
  
     0.425
GCA_001676655_00681
Unannotated protein.
  
     0.408
GCA_001676655_00541
Unannotated protein.
  
    0.401
Your Current Organism:
Perlucidibaca aquatica
NCBI taxonomy Id: 1852776
Other names: JCM 31377, KCTC 52162, P. aquatica, Perlucidibaca aquatica Baek et al. 2017, Perlucidibaca sp. BK296, strain BK296
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.