STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBT07348.116S rRNA (cytidine(1402)-2'-O)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)    
Predicted Functional Partners:
OBT07349.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.605
OBT07350.1
YraN family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.605
OBT07351.1
Phosphoheptose isomerase; Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.605
OBT10211.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.563
OBT07352.1
BON domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.549
OBT07338.1
Cell division protein FtsZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.547
OBT07944.1
uroporphyrinogen-III C-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.541
OBT16738.1
uroporphyrinogen-III C-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.541
OBT15569.1
uroporphyrinogen-III C-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.541
OBT12210.1
16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.472
Your Current Organism:
Vibrio sp. UCDFRSSP1630
NCBI taxonomy Id: 1853258
Other names: V. sp. UCD-FRSSP16_30, Vibrio sp. UCD-FRSSP16_30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.