STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_3Tyrosine recombinase XerD. (313 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.713
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
  0.713
ruvB
Holliday junction ATP-dependent DNA helicase RuvB.
  
  
 0.592
xerD_1
Tyrosine recombinase XerD.
  
     0.538
ruvA
Holliday junction ATP-dependent DNA helicase RuvA.
  
  
 0.526
uvrB
UvrABC system protein B.
  
  
 0.521
uvrA
UvrABC system protein A.
 
  
  0.514
hsdS_2
Type-1 restriction enzyme EcoKI specificity protein.
    
 0.508
ruvC
Crossover junction endodeoxyribonuclease RuvC.
     
 0.444
GCA_001858025_01802
Hypothetical protein.
       0.432
Your Current Organism:
Trichormus sp. NMC1
NCBI taxonomy Id: 1853259
Other names: T. sp. NMC-1, Trichormus sp. NMC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.