STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPF22402.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)    
Predicted Functional Partners:
OPF22401.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.641
OPF22019.1
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.614
OPF24218.1
Patched family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.545
OPF23251.1
TIGR00269 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.450
OPF21492.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.447
OPF22400.1
Transcriptional regulator TrmB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.436
OPF23589.1
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
 
 
 0.413
cetZ
Hypothetical protein; Involved in cell shape control; Belongs to the CetZ family.
 
 
 
 0.408
OPF22336.1
CBS domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.408
cetZ-2
Cell division protein; Involved in cell shape control; Belongs to the CetZ family.
 
 
 
 0.405
Your Current Organism:
Halolamina sp. CBA1230
NCBI taxonomy Id: 1853690
Other names: H. sp. CBA1230
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.