STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tb11.02.4460Uncharacterized protein. (394 aa)    
Predicted Functional Partners:
Tb927.8.4220
DFRP_C domain-containing protein.
   
    0.602
Tb927.2.5850
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.545
Tb09.160.3820
Nucleolar RNA binding protein, putative.
   
   0.527
Tb10.6k15.2330
T-complex protein 1, theta subunit, putative.
   
  
 0.521
Tb09.211.1695
Small nuclear ribonucleoprotein Sm-F.
   
   0.454
Tb927.6.2700
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
   0.452
Tb10.70.2250
Small nuclear ribonucleoprotein, putative.
   
   0.451
Tb927.4.890
Small nuclear ribonucleoprotein SmD3, putative.
   
   0.451
Tb927.8.4450
RNA-binding protein, putative.
   
 
 0.431
Tb11.01.5915
Small nuclear ribonucleoprotein Sm-G.
   
    0.422
Your Current Organism:
Trypanosoma brucei
NCBI taxonomy Id: 185431
Other names: T. brucei brucei TREU927, Trypanosoma brucei TREU927, Trypanosoma brucei brucei TREU927, Trypanosoma brucei brucei strain 927/4 GUTat10.1, Trypanosoma brucei strain TREU927
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.