STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tb10.389.0550Ras-related protein rab-5. (230 aa)    
Predicted Functional Partners:
Tb10.6k15.0260
VPS9 domain-containing protein.
    
 0.912
Tb927.3.4680
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.906
Tb10.6k15.3990
Vacuolar protein sorting-associated protein 45, putative; Belongs to the STXBP/unc-18/SEC1 family.
 
  
 0.788
Tb11.02.2110
N-acetyltransferase subunit ARD1.
   
  
 0.774
Tb10.26.0260
Uncharacterized protein.
    
 0.772
Tb09.211.2330
Small GTPase, putative.
  
0.759
Tb11.01.2810
RING-type domain-containing protein.
    
 
 0.758
Tb11.47.0033
Pep3_Vps18 domain-containing protein.
    
 
 0.748
Tb10.389.0480
Vacuolar protein sorting complex subunit, putative; Belongs to the VPS16 family.
    
 
 0.746
Tb927.8.7200
RING-type domain-containing protein.
    
 
 0.741
Your Current Organism:
Trypanosoma brucei
NCBI taxonomy Id: 185431
Other names: T. brucei brucei TREU927, Trypanosoma brucei TREU927, Trypanosoma brucei brucei TREU927, Trypanosoma brucei brucei strain 927/4 GUTat10.1, Trypanosoma brucei strain TREU927
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.