STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK53399.1Tetratricopeptide repeat-containing protein. (707 aa)    
Predicted Functional Partners:
SEK53498.1
Multi-sensor signal transduction histidine kinase.
 
  
  0.958
SEK53548.1
Sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
    0.938
SEK53449.1
Two component, sigma54 specific, transcriptional regulator, Fis family.
 
 
 0.925
SEL56371.1
Glycosyltransferase family 9 (heptosyltransferase).
  
 
 0.841
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.816
SEK61507.1
Exosortase A.
 
     0.807
SEK53614.1
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
       0.800
SEL90183.1
Uncharacterised nucleotidyltransferase.
 
    0.799
SEK61815.1
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.
 
     0.790
SEK95882.1
Probable O-glycosylation ligase, exosortase A-associated.
 
  
  0.780
Your Current Organism:
Sphingomonas sp. JS211
NCBI taxonomy Id: 1855283
Other names: S. sp. JS21-1, Sphingomonas sp. JS21-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.