STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsK-2Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (314 aa)    
Predicted Functional Partners:
SDQ58174.1
Purine nucleosidase.
 
 
 0.860
SDQ60861.1
CubicO group peptidase, beta-lactamase class C family.
       0.779
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
    
 0.763
SDQ60786.1
Hypothetical protein.
 
     0.708
SDQ57688.1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
   
 0.699
SDQ60811.1
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain.
 
     0.699
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
 
  
 0.695
SDR07733.1
Phosphomannomutase / phosphoglucomutase.
   
 
 0.632
SDQ93365.1
5-deoxyglucuronate isomerase.
  
 
 0.631
SDQ60880.1
Iron complex outermembrane recepter protein.
 
     0.580
Your Current Organism:
Pseudoxanthomonas sp. CF125
NCBI taxonomy Id: 1855303
Other names: P. sp. CF125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.