SEI17762.1 protein (Tardiphaga sp. OK245) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEI17762.1

Hypothetical protein. (245 aa)

Predicted Functional Partners:

SEH48132.1

0.858

SEH48183.1

0.842

SEH98146.1

0.842

SEH42979.1

0.824

SEH55610.1

0.824

SEH47198.1

0.806

SEI06368.1

0.793

SEH48159.1

0.712

SEH47164.1

0.606

hmuV

0.606

Your Current Organism:

Tardiphaga sp. OK245

NCBI taxonomy Id: 1855306
Other names: T. sp. OK245

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEH42979.1	SEH48183.1	SAMN05216367_0222	SAMN05216367_0584	iron(III) transport system substrate-binding protein.	Iron complex transport system substrate-binding protein.	0.594
SEH42979.1	SEH98146.1	SAMN05216367_0222	SAMN05216367_2675	iron(III) transport system substrate-binding protein.	Iron complex transport system substrate-binding protein.	0.594
SEH42979.1	SEI06368.1	SAMN05216367_0222	SAMN05216367_3390	iron(III) transport system substrate-binding protein.	High-affinity iron transporter.	0.855
SEH42979.1	SEI17762.1	SAMN05216367_0222	SAMN05216367_4656	iron(III) transport system substrate-binding protein.	Hypothetical protein.	0.824
SEH47164.1	SEH47198.1	SAMN05216367_0520	SAMN05216367_0522	Iron complex transport system ATP-binding protein.	Iron complex transport system substrate-binding protein.	0.996
SEH47164.1	SEH48159.1	SAMN05216367_0520	SAMN05216367_0582	Iron complex transport system ATP-binding protein.	Hemoglobin/transferrin/lactoferrin receptor protein.	0.721
SEH47164.1	SEH48183.1	SAMN05216367_0520	SAMN05216367_0584	Iron complex transport system ATP-binding protein.	Iron complex transport system substrate-binding protein.	0.986
SEH47164.1	SEH98146.1	SAMN05216367_0520	SAMN05216367_2675	Iron complex transport system ATP-binding protein.	Iron complex transport system substrate-binding protein.	0.978
SEH47164.1	SEI06368.1	SAMN05216367_0520	SAMN05216367_3390	Iron complex transport system ATP-binding protein.	High-affinity iron transporter.	0.826
SEH47164.1	SEI17762.1	SAMN05216367_0520	SAMN05216367_4656	Iron complex transport system ATP-binding protein.	Hypothetical protein.	0.606
SEH47198.1	SEH47164.1	SAMN05216367_0522	SAMN05216367_0520	Iron complex transport system substrate-binding protein.	Iron complex transport system ATP-binding protein.	0.996
SEH47198.1	SEH48159.1	SAMN05216367_0522	SAMN05216367_0582	Iron complex transport system substrate-binding protein.	Hemoglobin/transferrin/lactoferrin receptor protein.	0.548
SEH47198.1	SEI06368.1	SAMN05216367_0522	SAMN05216367_3390	Iron complex transport system substrate-binding protein.	High-affinity iron transporter.	0.810
SEH47198.1	SEI17762.1	SAMN05216367_0522	SAMN05216367_4656	Iron complex transport system substrate-binding protein.	Hypothetical protein.	0.806
SEH47198.1	hmuV	SAMN05216367_0522	SAMN05216367_0586	Iron complex transport system substrate-binding protein.	Iron complex transport system ATP-binding protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.	0.990
SEH48132.1	SEH48159.1	SAMN05216367_0580	SAMN05216367_0582	Hypothetical protein.	Hemoglobin/transferrin/lactoferrin receptor protein.	0.787
SEH48132.1	SEH48183.1	SAMN05216367_0580	SAMN05216367_0584	Hypothetical protein.	Iron complex transport system substrate-binding protein.	0.455
SEH48132.1	SEI17762.1	SAMN05216367_0580	SAMN05216367_4656	Hypothetical protein.	Hypothetical protein.	0.858
SEH48132.1	hmuV	SAMN05216367_0580	SAMN05216367_0586	Hypothetical protein.	Iron complex transport system ATP-binding protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.	0.512
SEH48159.1	SEH47164.1	SAMN05216367_0582	SAMN05216367_0520	Hemoglobin/transferrin/lactoferrin receptor protein.	Iron complex transport system ATP-binding protein.	0.721