SFO91454.1 protein (Cupriavidus sp. OV096) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFO91454.1

Predicted kinase, aminoglycoside phosphotransferase (APT) family. (358 aa)

Predicted Functional Partners:

SFO91326.1

0.984

SFP93680.1

0.933

SFP00634.1

0.903

SFO79590.1

0.804

SFQ00363.1

0.803

SFP00749.1

0.802

SFO90789.1

0.787

SFP18324.1

0.784

SFO91495.1

0.780

SFP64589.1

0.770

Your Current Organism:

Cupriavidus sp. OV096

NCBI taxonomy Id: 1855314
Other names: C. sp. OV096

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFO79590.1	SFO90789.1	SAMN05216322_102512	SAMN05216322_103148	3-hydroxyacyl-CoA dehydrogenase.	Acyl dehydratase.	0.783
SFO79590.1	SFO91326.1	SAMN05216322_102512	SAMN05216322_103170	3-hydroxyacyl-CoA dehydrogenase.	acyl-CoA dehydrogenase.	0.927
SFO79590.1	SFO91454.1	SAMN05216322_102512	SAMN05216322_103175	3-hydroxyacyl-CoA dehydrogenase.	Predicted kinase, aminoglycoside phosphotransferase (APT) family.	0.804
SFO79590.1	SFO91495.1	SAMN05216322_102512	SAMN05216322_103177	3-hydroxyacyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.750
SFO79590.1	SFP00634.1	SAMN05216322_102512	SAMN05216322_103554	3-hydroxyacyl-CoA dehydrogenase.	Short chain enoyl-CoA hydratase.	0.899
SFO79590.1	SFP18324.1	SAMN05216322_102512	SAMN05216322_104398	3-hydroxyacyl-CoA dehydrogenase.	Acyl-CoA dehydrogenase.	0.907
SFO79590.1	SFP64589.1	SAMN05216322_102512	SAMN05216322_108156	3-hydroxyacyl-CoA dehydrogenase.	acyl-CoA dehydrogenase.	0.893
SFO79590.1	SFP93680.1	SAMN05216322_102512	SAMN05216322_113136	3-hydroxyacyl-CoA dehydrogenase.	acyl-CoA dehydrogenase.	0.906
SFO79590.1	SFQ00363.1	SAMN05216322_102512	SAMN05216322_1158	3-hydroxyacyl-CoA dehydrogenase.	Acyl dehydratase.	0.783
SFO90789.1	SFO79590.1	SAMN05216322_103148	SAMN05216322_102512	Acyl dehydratase.	3-hydroxyacyl-CoA dehydrogenase.	0.783
SFO90789.1	SFO91326.1	SAMN05216322_103148	SAMN05216322_103170	Acyl dehydratase.	acyl-CoA dehydrogenase.	0.532
SFO90789.1	SFO91454.1	SAMN05216322_103148	SAMN05216322_103175	Acyl dehydratase.	Predicted kinase, aminoglycoside phosphotransferase (APT) family.	0.787
SFO90789.1	SFP00634.1	SAMN05216322_103148	SAMN05216322_103554	Acyl dehydratase.	Short chain enoyl-CoA hydratase.	0.832
SFO91326.1	SFO79590.1	SAMN05216322_103170	SAMN05216322_102512	acyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.927
SFO91326.1	SFO90789.1	SAMN05216322_103170	SAMN05216322_103148	acyl-CoA dehydrogenase.	Acyl dehydratase.	0.532
SFO91326.1	SFO91454.1	SAMN05216322_103170	SAMN05216322_103175	acyl-CoA dehydrogenase.	Predicted kinase, aminoglycoside phosphotransferase (APT) family.	0.984
SFO91326.1	SFO91495.1	SAMN05216322_103170	SAMN05216322_103177	acyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.514
SFO91326.1	SFP00634.1	SAMN05216322_103170	SAMN05216322_103554	acyl-CoA dehydrogenase.	Short chain enoyl-CoA hydratase.	0.938
SFO91326.1	SFP00749.1	SAMN05216322_103170	SAMN05216322_103560	acyl-CoA dehydrogenase.	Hypothetical protein.	0.494
SFO91326.1	SFQ00363.1	SAMN05216322_103170	SAMN05216322_1158	acyl-CoA dehydrogenase.	Acyl dehydratase.	0.547