STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP97556.1Transcriptional regulator, AraC family with amidase-like domain. (341 aa)    
Predicted Functional Partners:
SFO63981.1
RNA polymerase, sigma 70 subunit, RpoD.
   
 
 0.815
SFP70893.1
Transcriptional regulator, AraC family.
 
 
 0.662
SFP97583.1
Predicted arabinose efflux permease, MFS family.
       0.636
SFQ14197.1
DNA-3-methyladenine glycosylase II.
  
 
  0.612
SFO75817.1
Thiamine-phosphate diphosphorylase.
    
  0.562
SFP15897.1
AraC-type DNA-binding protein.
  
   0.520
SFP55758.1
Transcriptional regulator, AraC family.
  
   0.511
SFP55368.1
Transcriptional regulator, AraC family.
  
   0.510
SFO57423.1
SOS-response transcriptional repressor, LexA.
   
   0.432
SFP64141.1
Metal dependent phosphohydrolase.
 
     0.424
Your Current Organism:
Cupriavidus sp. OV096
NCBI taxonomy Id: 1855314
Other names: C. sp. OV096
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.