STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO92335.1MFS transporter, ACS family, D-galactonate transporter. (439 aa)    
Predicted Functional Partners:
SFO92310.1
Transcriptional regulator, TetR family.
       0.773
SFO92360.1
Sugar lactone lactonase YvrE.
       0.723
SFO92287.1
Quinate dehydrogenase (quinone).
 
     0.629
SFP71807.1
Sugar phosphate permease.
  
 
0.492
SFO77403.1
Glucarate dehydratase.
 
  
 0.474
SFO77158.1
Galactarate dehydratase.
 
   
 0.448
Your Current Organism:
Variovorax sp. OK605
NCBI taxonomy Id: 1855317
Other names: V. sp. OK605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.