STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP08985.1Malate synthase. (724 aa)    
Predicted Functional Partners:
SFP33060.1
Isocitrate lyase.
 
 
 0.996
SFP43118.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
 
 
 0.977
SFP86559.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
 
 
 0.977
SFQ22852.1
Phosphate acetyltransferase.
  
 
 0.952
SFO72651.1
Malate dehydrogenase (NAD).
   
 0.928
SFP75363.1
Fumarase, class I, homodimeric.
 
  
 0.928
SFQ68418.1
Acetate kinase.
   
 
 0.918
SFP17464.1
Glycolate oxidase iron-sulfur subunit.
  
 
 0.913
SFO70117.1
Citrate synthase.
   
 0.904
SFP85396.1
Citrate synthase.
   
 0.904
Your Current Organism:
Variovorax sp. OK605
NCBI taxonomy Id: 1855317
Other names: V. sp. OK605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.