STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP42831.1Protein of unknown function. (978 aa)    
Predicted Functional Partners:
SFO67504.1
VWA domain containing CoxE-like protein.
 
     0.788
SFO67495.1
SWIM zinc finger.
 
     0.787
SFO67514.1
Hypothetical protein.
 
     0.784
SFO67526.1
MoxR-like ATPase.
     0.777
SFP42804.1
Predicted arabinose efflux permease, MFS family.
       0.773
SFQ57083.1
VWA domain containing CoxE-like protein.
 
     0.738
SFQ57025.1
MoxR-like ATPase.
     0.729
SFQ57067.1
Hypothetical protein.
 
     0.681
SFQ49149.1
Putative RNA 2'-phosphotransferase.
  
     0.662
SFO92381.1
RNA ligase.
  
     0.645
Your Current Organism:
Variovorax sp. OK605
NCBI taxonomy Id: 1855317
Other names: V. sp. OK605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.