STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP45643.1BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. (270 aa)    
Predicted Functional Partners:
SFQ49957.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
 
 
 0.989
SFO92682.1
acetyl-CoA carboxylase, biotin carboxylase subunit.
 
 0.971
SFQ11502.1
Biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase subunit alpha.
 
 0.971
SFQ01996.1
3-methylcrotonyl-CoA carboxylase alpha subunit.
 
  
 0.955
SFO63441.1
propionyl-CoA carboxylase alpha chain.
 
  
 0.954
SFP49366.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
 
    0.954
SFO92703.1
acetyl-CoA carboxylase biotin carboxyl carrier protein.
 
 
 
 0.953
SFP13809.1
geranyl-CoA carboxylase alpha subunit.
 
  
 0.953
SFQ11531.1
acetyl-CoA carboxylase biotin carboxyl carrier protein.
 
 
 
 0.953
SFP50063.1
acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.
 
  
 0.951
Your Current Organism:
Variovorax sp. OK605
NCBI taxonomy Id: 1855317
Other names: V. sp. OK605
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